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Tytuł artykułu

Topological Complexity in Protein Structures

Treść / Zawartość
Warianty tytułu
Języki publikacji
EN
Abstrakty
EN
For DNA molecules, topological complexity occurs exclusively as the result of knotting or linking of the polynucleotide backbone. By contrast, while a few knots and links have been found within the polypeptide backbones of some protein structures, non-planarity can also result from the connectivity between a polypeptide chain and inter- and intra-chain linking via cofactors and disulfide bonds. In this article, we survey the known types of knots, links, and non-planar graphs in protein structures with and without including such bonds and cofactors. Then we present new examples of protein structures containing Möbius ladders and other non-planar graphs as a result of these cofactors. Finally, we propose hypothetical structures illustrating specific disulfide connectivities that would result in the key ring link, the Whitehead link and the 51 knot, the latter two of which have thus far not been identified within protein structures.
Wydawca
Rocznik
Tom
3
Numer
1
Opis fizyczny
Daty
otrzymano
2014-02-08
zaakceptowano
2015-01-16
online
2015-05-04
Twórcy
autor
  • Department of Mathematics, Pomona College, 640 North College Avenue, Claremont, CA 91711 USA
  • Department of Mathematics, Pomona College, 640 North College Avenue, Claremont, CA 91711 USA
Bibliografia
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Typ dokumentu
Bibliografia
Identyfikatory
Identyfikator YADDA
bwmeta1.element.doi-10_1515_mlbmb-2015-0002
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