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2013 | 23 | 3 | 669-684

Tytuł artykułu

On a matching distance between rooted phylogenetic trees

Treść / Zawartość

Warianty tytułu

Języki publikacji

EN

Abstrakty

EN
The Robinson-Foulds (RF) distance is the most popular method of evaluating the dissimilarity between phylogenetic trees. In this paper, we define and explore in detail properties of the Matching Cluster (MC) distance, which can be regarded as a refinement of the RF metric for rooted trees. Similarly to RF, MC operates on clusters of compared trees, but the distance evaluation is more complex. Using the graph theoretic approach based on a minimum-weight perfect matching in bipartite graphs, the values of similarity between clusters are transformed to the final MC-score of the dissimilarity of trees. The analyzed properties give insight into the structure of the metric space generated by MC, its relations with the Matching Split (MS) distance of unrooted trees and asymptotic behavior of the expected distance between binary n-leaf trees selected uniformly in both MC and MS (Θ(n^{3/2})).

Rocznik

Tom

23

Numer

3

Strony

669-684

Opis fizyczny

Daty

wydano
2013
otrzymano
2012-01-27
poprawiono
2013-04-03

Twórcy

  • Department of Algorithms and System Modeling, Faculty of Electronics, Telecommunications and Informatics, Gdańsk University of Technology, Narutowicza 11/12, 80-233 Gdańsk, Poland
  • Department of Algorithms and System Modeling, Faculty of Electronics, Telecommunications and Informatics, Gdańsk University of Technology, Narutowicza 11/12, 80-233 Gdańsk, Poland

Bibliografia

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Typ dokumentu

Bibliografia

Identyfikatory

Identyfikator YADDA

bwmeta1.element.bwnjournal-article-amcv23z3p669bwm
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